CF MB

The Core Facility Molecular Biology (CF-MB) offers technologies, advice and guidance in the field of genomic and  transcriptomic studies. We focus on 10x Genomics (single cell and in-situ-spatial transcriptomics) as well as Next Generation Sequencing (NGS) based applications (RNA sequencing and microbial community characterization). High-quality sample preparation with fully automated pipetting systems ensure standardized workflows for reproducible data.

The development of new protocols and methods is also part of our service and depends on our staff and lab resources.

Contact us for further information and to discuss your specific project needs!

Managing Directors

Birgit Gallé & Nina Schweintzger 
T: +43 316 385 72828
T: +43 316 385 72830

CF MB

News

  • NEW! Visium HD is now available!
  • Xenium Analyzer: 5K Panel is now available!
  • 10x FLEX protocol: scRNA Seq for FFPE and fixed material!
  • Bulk RNA Seqfrom FFPE material is established!


Save the dates:

CF MB

Establishment of protocols/methods

  • Transcriptome analysis from extracellular vesicles. Status: in progress
  • Nanopore ligation protocol for microbiome. Status: in progress
  • Automated RNA extraction from FFPE material. Status: in progress
  • Lexogen QuantSeq FWD libraries. Status: in progress

 

CF MB

Cooperation partners

To perform 10x technologies a multidisciplinary team of experts is needed.

Core Facilities of the ZMF

  • Core Facility Computational Bioanalytics
  • Core Facility Bioimaging & Flow Cytometry
     

Core Facility of Biomedical Research

  • Alternative Biomodels and Preclinical Imaging
     

Vienna BioCenter Core Facilities

  • Core Facility Next Generation Sequencing
CF MB

Automated pipelines

  • QiaSymphony: DNA/RNA extraction; 24 samples/run (3 x runs/day)
  • Biomek i7: NGS library preparation; 96 samples/run (min. 48 samples)
  • mRNA enriched bulk RNA Seq
  • rRNA depleted bulk RNA Seq
  • Metagenome