CF MB

We offer the following services in the area of genome- and transcriptome research.

 

 

10x Genomics based spatial transcriptomics

Xenium: In situ-spatial transcriptomics with subcellular resolution: Visualize, quantify, and analyze up to 5000 RNA targets on tissue sections that are immobilized onto a slide.

Visium: Whole transcriptome spatial analysis for FFPE and fresh frozen material.

CytAssist: Transfer of transcriptomic probes from archived standard glass slides to Visium slides, enabling whole transcriptomic spatial profiling

10x Genomics based sc/sn RNA-seq

We offer single cell as well as single nuclei RNA sequencing from different sample types and organisms. With the FLEX protocols you can fix samples in Paraformaldehyde, batch and run them on your own schedule! Also possible with FFPE samples.

Bulk RNAseq

Depending on sample size, type and RNA concentration we do have different kits available for library preparations. Preparations can be done manually or automated and you can choose between mRNA enrichment or rRNA depletion protocols.

Nucleic acid extraction and QC

We offer RNA and DNA isolation from different sample sources, including FFPE. Depending on sample size and type, extractions are done manually or automated.

Gene expression

Depending on sample size, we have automated or manual workflows for your qPCR, ddPCR and Nanostring projects.

Microbiome/Metagenomics

We offer workflows for 16s amplicon sequencing as well as for shotgun metagenomic sequencing. High and low biomass samples can be used.

Establishment of methods

Establishment of protocols and methods is possible depending on our lab and staff ressources.